Category

Databases and Web Resources

Note

Database

comprehensive systems-biology database (CSB.DB)

Bio-statistical analyses on gene expression data

Human Protein Reference Database (HPRD)

The function of human proteins in health and disease, proteomic interactions and alterations

BioCyc

A collection of Pathway/Genome Databases

CSNDB (Cell Signaling Networks Database)

Database of Quantitative Cellular Signaling (DOQCS)

Models of signaling pathways

Pathway

Kinase Pathway Database

Protein kinases, pathways, protein-protein interaction data

(EMP) Enzymes and Metabolic Pathways database

Enzymology and metabolism

MetaCyc - Metabolic Encyclopedia

Metabolic pathways and their associated enzymes

WIT

Gene functions and metabolic models

ExPASy - Biochemical Pathways

GeNet (Gene Networks Database)

Regulatory genes networks acting at embryogenesis

KEGG(Kyoto Encyclopedia of Genes and Genomes)

Interacting molecules or genes

TRANSPATH

Pathways in the regulation of transcription factors

Interactions

BIND

Biomolecular Interaction Network Database

DIP

Database of Interacting Proteins

GRID (General Repository for Interaction Datasets)

Genetic and physical interactions

Interact

An Object Oriented Database for Protein-Protein Interactions

Protein-Protein Interaction Server

The protein-protein interface

Pronet Online

Protein-protein interaction

Protein in cells

Cellware

Deterministic and stochastic events in the cell

PSORT

Prediction of protein localization sites in cells

Protein annotation diagram oriented analysis  (PANDORA)

Analysis of protein sets by integration of annotation sources

E. coli

EcoCyc Encyclopedia

The genome and the biochemical machinery of E. coli

Yeast

MIPS yeast pathways

Yeast protein complex database

Microbial

UM-BBD

Microbial Biocatalysis/Biodegradatation