Category

Databases and Web sources

Note

Web resources

The SNP Consortium (TSC)

The Human Genome Variation Society (HGVS)

The Environmental Genome Project (EGP)

The UW-FHCRC Variation Discovery Resource (SeattleSNPs)

SNP databases

dbSNP

SNP database at NCBI

Human SNP Database

Database map

Human Chromosome 21 cSNP
Database and MAP

Japanese Single Nucleotide Polymorphisms (JSNP)

GeneSNPs

Gene models, pathways

Human Genome Variation Database (HGVbase)

MASC SNP DB

The PCR and SNP primer(s) Database

Based on human SNPs

The Mouse SNP Database

A SNP database of mouse

Mouse SNP Data

Mouse SNPs

Mutation databases

Human Gene Mutation Database (HGMD)

Gene lesions responsible for inherited disease

Mammalian Gene Mutation Database (MGMD)

Mutation Spectra Database at Yale University

Mutations in various species

Ribosomal RNA (rRNA) Mutation Database

Homology and similarity searching

SNP-Fasta  

Search SNPs for homology and similarity

DIFFSEQ

Find SNPs between nearly identical sequences

HNP - Human Nucleotide Polymorphisms

Annotation

Visualization

SNP Maps

Locations of SNPs.

Gene Viewer

View SNPs in transcripts, ORFs and motifs

Expression-Based SNP Imagemaps

Based on chromosome, tissue, and histology

SNPview

SNP distributions in the mouse genome

Functional effect

PolyPhen

Predicts structural and functional effects

rSNP_Guide

The influence of mutations in regulatory regions

Population

ALFRED - Allele Frequency Database

On human populations

The Distribution of the Human DNA-PCR Polymorphisms

Disease

Online Mendelian Inheritance in Man (OMIM)

Human genes and genetic disorders

GeneDis
Human Genetic Disease Database

Disease-related genetic mutations

Frequency of Inherited Disorders Database (FIDD)