Category

Databases and Web Sources

Note

Databases and tools

ACID

For microarray clone information

Argus

To process, analyze, manage, and publish microarray data

ArrayExpress at the EBI

Gene expression

BODYMAP

Human and mouse data

ChipDB

Gene expression

3D-GeneExpression Database

ExpressDB

Yeast and E. coli RNA expression

Gene Expression Atlas

From human and mouse samples

Gene Expression Database (GXD)

Mouse

Gene Expression Omnibus

Gene Resource Locator

GEOSS (Gene Expression Open Source System)

For archiving and analyzing Affymetrix GeneChip data

GermOnline

Human Gene Expression Index (HuGE Index)

The expression of human genes in normal human tissues

List Of Lists Annotated (LOLA)

M-CHiPS (Multi-Conditional Hybridization Intensity Processing System)

The Medical University of South Carolina (MUSC) DNA Microarray Database

The Mouse SAGE Site

MUSC DNA Microarray Database

NASCArrays

Affymetrix data from NASC's transcriptomics service

Oncomine

Public Expression Profiling Resource (PEPR)

Quality control and standard operating procedure (QC/SOP) Affymetrix data

READ (RIKEN cDNA Expression Array Database)

Rice Expression Database (RED)

RNA Abundance Database (RAD)

Saccharomyces Genome Database (SGD): Expression Connection

Soybean Genomics and Microarray Database (SGMD)

Standford Microarray Database (SMD)

The Longhorn Array Database (LAD)

A fully open source version of the Stanford Microarray Database (SMD)

TissueInfo

Yale Microarray Database

yeast Microarray Global Viewer (yMGV)

Microarray and Diseases

Microarray Expression Profiling of Rodent Models of Human Disease

By The Institute for Genomic Research (TIGR) (Rockville, MD)

Microarray Analysis for Human Genetics Disease

By National Human Genome Research Institute (NHGRI)

The Gene Microarray Core

Digestive Disease Research Center

By Vanderbilt Medical Center

Gene Express

By American Thoracic Society

Expression Profiling in Canine Models of Cardiopulmonary Disease, Bioinformatics & Modeling Core

By The Center for Cardiovascular Bioinformatics and Modeling

Standards and Guidelines

Minimum information about a microarray experiment (MIAME)

By Microarray Gene Expression Data Society-MGED Society

Microarray Standards

By EMBL-EMI

Protocols

TIGR Microarray Protocols and Standard Operating Procedures

Protocols at microarrays.org

UCSC Microarray Equipment & Protocols

The Brown Lab’s complete guide to microarraying for the molecular biologist

NITHS Microarray Group

Experimental Procedures for Small Molecule Printing